Browsing by Author "Guenza, Marina"

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Diffusive and activated contributions in protein dynamics.

Copperman, Jeremy (University of Oregon, 2016-10-27)

A novel approach is developed to describe the dynamics of proteins, the coarse-grained Langevin Equation for Protein Dynamics (LE4PD). The approach describes proteins as fundamentally semiflexible objects collapsed into ...
Extensions of the Langevin Equation for Protein Dynamics for Modelling Equilibrium Fluctuations of Proteins

Beyerle, Eric (University of Oregon, 2021-11-23)

Proteins are not static structures; they must undergo conformational fluctuations about their folded state to function. Typically, the slow, near-equilibrium conformational dynamics of proteins encode the functional motions; ...
Markov Models for the Conformational Kinetics in DNA Breathing Fluctuations

Romano, Pablo (University of Oregon, 2018-04-10)

As the genetic content is internally located within DNA duplexed form, it has long been hypothesized that DNA undergoes a series of thermally induced conformational changes that assist in protein recognition events. The ...
Molecular Level Insights into Carbon Capture at Liquid Surfaces

McWilliams, Laura (University of Oregon, 2016-10-27)

Implementing effective and environmentally responsible carbon capture technologies is one of the principle challenges of this century. Successful implementation requires a host of engineering advancements, but also a ...
Real-Space Visualization of Organic Molecular Electronic Structure: Scanning Tunneling Microscopy and Spectroscopy

Taber, Benjamen (University of Oregon, 2018-09-06)

Organic electronics are becoming an increasingly important part of the semiconductor industry, with myriad applications enabled by their low cost, solution processability, and electrical conductivity. Charge transport in ...
Vibrational Sum Frequency Spectroscopic Investigations of Carboxylic Acid- Containing Polyelectrolytes at the Oil-Water Interface

Robertson, Ellen (University of Oregon, 2014-09-29)

The boundary between two immiscible fluids is an important location for the adsorption and assembly of polyelectrolytes. A good description of the fundamental properties of polyelectrolytes at such interfaces is a prerequisite ...